PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1643_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 229aa    MW: 25725.3 Da    PI: 9.298
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1643_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000397698123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                         ++C++C k F ++  L  H++ H
  cra_locus_1643_iso_1_len_1121_ver_3 76 FECQYCFKGFANSQALGGHQNAH 98
                                         89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.51E-672103No hitNo description
Gene3DG3DSA:3.30.160.601.6E-474102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.2476103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
XFLYPSSKSS CQEKKLKLFG FELDPCQNKE SFHKGSLEND HESVNSSSST ISTVGGKVKS  60
VAITTVLPAE QENKKFECQY CFKGFANSQA LGGHQNAHKK ERLKKKRLQL QARKASISYY  120
LQQPLLFQNN NSSSSSPIFV HDYSNNSYYS PHEFTISHDE LSQSQISFSS NYDHHGGGSQ  180
QLKAKWYARP VPFQPDPSSS CKFTLTHVEK SRENRAGSSV DLQLGLGFH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007044496.17e-52C2H2 and C2HC zinc fingers superfamily protein, putative
TrEMBLA0A068TY153e-59A0A068TY15_COFCA; Uncharacterized protein
STRINGVIT_01s0026g00850.t017e-47(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51362130